Analysis Tools, Tips, and Tricks
================================

The following documents are to help carry our NEMO analysis, often using matlab, cdftools, and so forth

A simple "plot sea surface height' matlab script that introduces a new user to matlab, NEMO output and M_map. A good place for a new user to start to learn a bit (WESSEX: /home/clark/TestMatlabScript.m)

`Rotating veocity components from model grid to real lat/lon <../../../_static/_UofA/Rotating_U_and_V_components_of_velocity.pdf>`_

`Volume flux calculations on NEMO output <../../../_static/_UofA/volume_flux_calculation_NEMO_Aug2015_xhu.pdf>`_ 

`How to calculate eddy kinetic energy (EKE) <../../../_static/_UofA/EKE.pdf>`_

`CDFTOOLS usage <../../../_static/_UofA/cdftools_usage.pdf>`_

O-SNAP python code to calculate MOC across the OSNAP section (`Information <https://www.o-snap.org/for-modelers/>`_ and `download <https://smartech.gatech.edu/handle/1853/67081>`_)

`M map <https://www.eoas.ubc.ca/~rich/map.html>`_, for nice figures

`Create a movie from a series of images <https://docs.google.com/document/d/13fxOFUH5NGnBHHHpmr_0gLzhr0aBEWzJUQzIQL6nIaY/edit?usp=sharing>`_ 

`Combine multiple figures together using Linux's Convert program <https://docs.google.com/document/d/1jLi8MTEUavnAPLtNhKnQ4Ic2t4lnc1QOynixhWLDf8Q/edit?usp=sharing>`_ 

`Make a multi-panel movie from a series of images <https://docs.google.com/document/d/1SJgsvEI7txiPzPnao93vASBPTL_j1ADAAh2bkLEThTg/edit?usp=sharing>`_ 

`OpenStreetMap Versus M_Map coastlines with matlab: <https://docs.google.com/document/d/e/2PACX-1vQy8pWV4fbrw6dvuzNMF1ZSVcjCAHzozz-bVhyg6YOZ0GV8u7oNHOKHgEGOgZYvvUPqYrM8jSR2di5w/pub>`_ 

`Ocean Parcels: Lagrangian Python toolbox <https://oceanparcels.org/>`_ 

`Section.dat information for section fluxes <https://docs.google.com/spreadsheets/d/e/2PACX-1vTlBZIdAGLPx_B3GiXJWZwsVLP7bfsDCs7nmkwBdVXznc2Kad_VpCM8AQkWNtrdL7mxKiUFYJ04cnEg/pubhtml>`_