NEMO Documents
===============

The following is a list of documents we use for our NEMO simulations. Many are locked to current/past lab members only.

.. toctree::
   :maxdepth: 1
   
   NEMO5

`Upgrading from NEMO 3.6 to NEMO 4.2.2 on the Graham HPC system <https://docs.google.com/document/d/e/2PACX-1vSkEsy0oGQS4uz2inNB6YNs-3SU2oLFypTfi8mzUN6OhbUhHHqsAb3-R5tfrugOpPgVUZeVwoGs3f8L/pub>`_

`NEMO 4.2 documentation <https://zenodo.org/record/8167700>`_

`NEMO 3.6 documentation <https://zenodo.org/record/3248739>`_

`Core-year calculator + new configuration estimator <https://docs.google.com/spreadsheets/d/1t-peMbAsEk3sCXb9Sw15VGo5HRBPpGJLXNRbO1Kei8o/edit?usp=sharing>`_ 

`Setting up a new NEMO 3.6 Experiment on Graham: Flowchart <https://lucid.app/lucidchart/81024a6b-ac08-4921-930d-fe0ccc99a41d/view?page=0_0#>`_

`Setting up a new NEMO 3.6 Experiment on Graham: document  <https://docs.google.com/document/d/1W2v8cVzn6AiH2SF37aibwz1p_gZpIbgl/edit>`_

`Setting up a new NEMO 3.6 Experiment on Graham with passive tracers: document <https://docs.google.com/document/d/12Nzcb61-5_qufylLfv8NJDHcX4JXhTX7zUVX-rQ_MIk/edit>`_

`Optimixing NEMO 3.6 decomposition <https://docs.google.com/document/d/1Fx6kQOL6UJxaxDruBoPRz-G5UjJHi-8zH42tc1hVcWI/edit>`_

`UofA NEMO FAQ/cheatsheet/hints <https://docs.google.com/document/d/e/2PACX-1vQeYJDD-kAk9ffCqOU15fm27I8FbWCtPdxipjUDHtXtel38-B71xWMeID6k_T6QRaZJ_E4xNFHmCxqk/pub>`_

`Building a weight file for an atmospheric forcing set <https://docs.google.com/document/d/e/2PACX-1vQyTC4HP7_sWqgyhjZv_ySh8tMuQBFlr4uWGXHJAzS7wolc8DDihivhZt8jQ4HxdN1qfkP0p1B5wHny/pub>`_

`NEMO timed out but my job finished, what can i do? <https://docs.google.com/document/d/18ZxZAJbwPkFo_wDmAeVc5IValYMT6xj7Yma4IMhfjX0/edit?usp=sharing>`_

`Inge's hints and suggestions for debugging NEMO <https://docs.google.com/document/d/1UmRvh9IzNX8iATCheNZ4ZpxNTqyDEM4ipnx0Pdxto3o/edit>`_

`Setting up a perpetual year forcing experiment <https://docs.google.com/document/d/1yq6X-NkuLIG8nfOJYV3KVofmCbfl7EoeJK0WVl-2lJc/edit>`_

`XIOS guide for high frequency output in smaller domains <https://docs.google.com/document/d/1eLnbSQKqLbW8d7qdZtUQMJRjcZLbMsrYf6BrFnrC3Rg/edit>`_

`Building NEMO mesh/mask files <https://docs.google.com/document/d/15lg7maZ3CBJK7vLW5oA-e_dU8EPLEl1kwI9xm_wXZUE/edit?usp=sharing>`_ 

`Section Tracers <https://docs.google.com/document/d/e/2PACX-1vR1368vugtUov5VFNzQuDF-baqTyx6E1fUwkBUtNIJXFMZ8Clc6a37Bh1yjAEOLBWSRKoMIuHWZFCGV/pub>`_ 

`Mesh/mask file locations on our servers <https://docs.google.com/document/d/e/2PACX-1vSt67rAGoOvcE2BTcTR-Wx-LTS0EFFOxZYRiUkwHjnioM1a3zf3WpvAt_3nxNd-gDI1l18fPe1DbNfo/pub>`_

`Updating the ERA5 and/or CMC GDPS atmospheric forcing sets once a full year of data becomes available <https://docs.google.com/document/d/e/2PACX-1vQz2_SJnNrHzVvoifjSqHSIr0EOy5Ov2Tt7ddM-cGLZNBQngsArHZ2ifQ2sXL4AOlfZCLbE8h8O_Zrj/pub>`_ 

`AGRIF documentation <https://onedrive.live.com/?authkey=%21AJkKZKo31%2DiIwQw&cid=C2D3E0AE7967A795&id=C2D3E0AE7967A795%211695426&parId=C2D3E0AE7967A795%211676213&o=OneUp>`_

`UAlberta NEMO tutorial <https://docs.google.com/document/d/1tWErkIAiK7JBJH2cncMndZaMipDQLvq8UfjwDPBKygA/>`_

`Working on Niagara and LAB60 <https://docs.google.com/document/d/e/2PACX-1vTVnzzgpIRgJznZyjqa0h5m61J_XWWxVbWokMX_v8UA4pmChiilBOym59tuddhzg8nEmiKnB7XG8H3D/pub>`_

`BLING variables and what they mean <https://docs.google.com/document/d/e/2PACX-1vTJ64Oxara0GNbhYpas1SrtP8uIiYvkJJ8vZUKtFdNiMPZvze9mocKb2nDUZKRwKjpnqaoZC-Fg-PHA/pub>`_